Basic Information
Locus ID:
gene.Posoc03g18980
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the EF-1-beta EF-1-delta family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 246830715 | 246831275 | - | gene.Posoc03g18980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 20,195.60 Da | 42.88 | 77.15 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00292 | EF1B | 137 | 186 | 4.11628E-19 | IPR014038 |
| Pfam | PF00736 | EF-1 guanine nucleotide exchange domain | 136 | 185 | 5.0E-16 | IPR014038 |
| SUPERFAMILY | SSF54984 | eEF-1beta-like | 132 | 185 | 1.44E-16 | IPR036219 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 8 | 66 | 2.02E-6 | IPR036282 |
| Gene3D | G3DSA:3.30.70.60 | - | 127 | 186 | 2.5E-23 | IPR014717 |
| SMART | SM00888 | EF1_GNE_2 | 134 | 186 | 0.0091 | IPR014038 |
| ProSitePatterns | PS00824 | Elongation factor 1 beta/beta'/delta chain signature 1. | 99 | 107 | - | IPR001326 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12110.1 | Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6. | 0 |
| RefSeq | XP_017254196.1 | PREDICTED: elongation factor 1-beta 2-like [Daucus carota subsp. sativus] | 0 |
| Q84WM9 | Elongation factor 1-beta 1 OS=Arabidopsis thaliana OX=3702 GN=At5g12110 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B7C2T1 | Putative elongation factor 1-beta 2 OS=Davidia involucrata OX=16924 GN=Din_044910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | BH06.579 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g36760.1 |
| Posidoniaceae | Posidonia oceanica | 7 | gene.Posoc02g28380, gene.Posoc03g18980, gene.Posoc04g01100 ... |