Basic Information
Locus ID:
gene.Posoc03g17810
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 222553753 | 222562765 | - | gene.Posoc03g17810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 20,438.98 Da | 51.13 | 76.24 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 71 | 122 | 2.7E-7 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 125 | 5.47E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 134 | 5.7E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 70 | 123 | 1.5E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 63 | 129 | 18.084805 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37950.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008788071.1 | E3 ubiquitin-protein ligase MARCHF11-like isoform X1 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A1D1ZD58 | E3 ubiquitin-protein ligase MARCH1 OS=Anthurium amnicola OX=1678845 GN=March1_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology