Basic Information
Locus ID:
gene.Posoc03g17240
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 211853189 | 211856936 | + | gene.Posoc03g17240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 35,830.38 Da | 44.80 | 70.19 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 54 | 92 | 1.53028E-14 | - |
| CDD | cd03829 | Sina | 170 | 298 | 4.24793E-66 | - |
| Pfam | PF03145 | Seven in absentia protein family | 98 | 297 | 1.8E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 95 | 1.55E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 109 | 301 | 1.83E-49 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | 3.2E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 98 | 2.8E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 164 | 2.7E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 109 | 169 | 14.262304 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 92 | 9.464913 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010267615.1 | PREDICTED: E3 ubiquitin-protein ligase SINAT5-like [Nelumbo nucifera] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8AWF9 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104604788 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology