Basic Information
Locus ID:
gene.Posoc03g13630
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 165199069 | 165204507 | - | gene.Posoc03g13630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 40,977.29 Da | 48.70 | 80.73 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.0643E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 145 | 194 | 7.08477E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 2.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 151 | 189 | 3.7E-15 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 337 | 373 | 1.6E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 5.3E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 380 | 3.71E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 148 | 199 | 1.31E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 86 | 1.33E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 254 | 320 | 5.23E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 249 | 313 | 5.2E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 329 | 377 | 1.2E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 3.5E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 144 | 194 | 8.0E-22 | - |
| SMART | SM00165 | uba_6 | 338 | 375 | 1.1E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 151 | 191 | 4.1E-5 | IPR015940 |
| SMART | SM00727 | CBM | 255 | 298 | 0.0014 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.4E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 381 | 2.7E-127 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 336 | 376 | 15.245769 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 18.105453 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 149 | 192 | 13.149322 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 363 | 9.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 332 | 348 | 9.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 364 | 379 | 9.8E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 9.8E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 135 | - | - |
| Coils | Coil | Coil | 284 | 304 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_008794386.2 | ubiquitin receptor RAD23b-like [Phoenix dactylifera] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B7C968 | Ubiquitin receptor RAD23 OS=Phoenix dactylifera OX=42345 GN=LOC103710457 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology