Basic Information
Locus ID:
gene.Posoc03g09000
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Small nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr03 | 76588534 | 76593422 | - | gene.Posoc03g09000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 31,898.98 Da | 53.95 | 82.90 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12247 | RRM2_U1A_like | 210 | 282 | 4.24177E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 214 | 273 | 1.2E-11 | IPR000504 |
| Pfam | PF00307 | Calponin homology (CH) domain | 41 | 144 | 2.8E-7 | IPR001715 |
| SUPERFAMILY | SSF47576 | Calponin-homology domain, CH-domain | 36 | 144 | 2.38E-15 | IPR036872 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 157 | 191 | 8.46E-7 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 206 | 285 | 1.25E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 202 | 286 | 2.0E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 154 | 201 | 2.4E-9 | IPR012677 |
| Gene3D | G3DSA:1.10.418.10 | - | 30 | 148 | 3.9E-20 | IPR036872 |
| SMART | SM00360 | rrm1_1 | 213 | 282 | 6.0E-10 | IPR000504 |
| ProSiteProfiles | PS50021 | Calponin homology (CH) domain profile. | 38 | 161 | 13.431181 | IPR001715 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 212 | 286 | 13.481327 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30260.1 | U2 small nuclear ribonucleoprotein B. encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. | 0 |
| RefSeq | XP_008782587.1 | U2 small nuclear ribonucleoprotein B'' [Phoenix dactylifera] | 0 |
| B8AM21 | U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_11177 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9PZW3 | U1 small nuclear ribonucleoprotein A OS=Zostera marina OX=29655 GN=ZOSMA_141G00120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology