HalophFGD

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Basic Information
Locus ID: gene.Posoc02g32710
Species & Taxonomic ID: Posidonia oceanica & 55489
Genome Assembly: GCA_037176725.1
Description: histone deacetylation
Maps and Mapping Data
Chromosome Start End Strand ID
Chr02 457747867 457753236 + gene.Posoc02g32710
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
10.21 35,946.74 Da 64.72 70.76 -0.46
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 21 55 2.0E-6 IPR001810
SUPERFAMILY SSF81383 F-box domain 23 64 6.15E-6 IPR036047
Gene3D G3DSA:1.20.1280.50 - 22 63 2.8E-7 -
SMART SM00256 fbox_2 26 66 0.0072 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 20 67 8.888098 IPR001810
MobiDBLite mobidb-lite consensus disorder prediction 280 317 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 23 AH01.3923, AH03.1073, AH03.1075, AH04.664, AH04.667 ...
AH04.673, AH05.433, AH08.2195, BH01.1079, BH01.4257, BH01.4266, BH03.1240, BH04.703, BH05.487, CH01.4555, CH03.1375, CH04.706, CH04.707, CH04.715, CH05.554, CH05.555, CH05.556, Contig1604.2
Poaceae Eleusine coracana subsp. coracana 11 gene-QOZ80_6AG0525670, gene-QOZ80_6AG0525690 ...
gene-QOZ80_6BG0479360, gene-QOZ80_8BG0667130, gene-QOZ80_8BG0667150, gene-QOZ80_9AG0676410, gene-QOZ80_9AG0676960, gene-QOZ80_9BG0700250, gene-QOZ80_9BG0700280, gene-QOZ80_9BG0700680, gene-QOZ80_9BG0700710
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.1HG0085110.1, HORVU.MOREX.r3.3HG0321190.1 ...
HORVU.MOREX.r3.3HG0328390.1.CDS1, HORVU.MOREX.r3.3HG0328450.1, HORVU.MOREX.r3.5HG0507210.1.CDS1
Poaceae Lolium multiflorum 15 gene-QYE76_000985, gene-QYE76_006996, gene-QYE76_007069 ...
gene-QYE76_041449, gene-QYE76_041477, gene-QYE76_044950, gene-QYE76_045255, gene-QYE76_056700, gene-QYE76_058336, gene-QYE76_058454, gene-QYE76_058766, gene-QYE76_059072, gene-QYE76_059073, gene-QYE76_059076, gene-QYE76_059078
Poaceae Oryza coarctata 4 Oco04G007650, Oco15G009840, Oco15G009850, Oco18G011940
Poaceae Oryza sativa 5 LOC_Os02g16740.1, LOC_Os02g16760.1, LOC_Os02g16770.1 ...
LOC_Os09g39050.1, LOC_Os09g39190.1
Poaceae Paspalum vaginatum 10 gene-BS78_03G190000, gene-BS78_03G190200, gene-BS78_K233200 ...
gene-BS78_05G100500, gene-BS78_05G102600, gene-BS78_05G102700, gene-BS78_05G107600, gene-BS78_K233300, gene-BS78_K241800, gene-BS78_K242000
Poaceae Puccinellia tenuiflora 4 Pt_Chr0600882, Pt_Chr0601124, Pt_Chr0700603, Pt_Chr0700604
Poaceae Sporobolus alterniflorus 2 Chr07G019720, Chr10G005970
Poaceae Thinopyrum elongatum 6 Tel2E01G813100, Tel3E01G890600, Tel3E01G891300 ...
Tel5E01G587900, Tel6E01G049100, Tel6E01G631000
Poaceae Triticum dicoccoides 14 gene_TRIDC3AG074560, gene_TRIDC3AG074600 ...
gene_TRIDC3AG074640, gene_TRIDC3BG060290, gene_TRIDC3BG084130, gene_TRIDC3BG085890, gene_TRIDC5AG052470, gene_TRIDC5BG057870, gene_TRIDC5BG057930, gene_TRIDC5BG067420, gene_TRIDC5BG067460, gene_TRIDC6AG059260, gene_TRIDC6BG002100, gene_TRIDC7BG076510
Poaceae Triticum aestivum 25 TraesCS2A02G006600.1.cds1, TraesCS2B02G506800.1.cds1 ...
TraesCS2B02G506900.1, TraesCS2D02G009300.1.cds1, TraesCS3B02G594900.1, TraesCS3B02G595000.1.cds1, TraesCS3B02G596100.1, TraesCS3D02G532200.1.cds1, TraesCS3D02G545400.1.cds1, TraesCS5A02G358800.1, TraesCS5B02G369700.1.cds1, TraesCS5B02G371000.1, TraesCS5D02G367800.1, TraesCS5D02G367900.1, TraesCS5D02G377500.1.cds1, TraesCS5D02G445700.1, TraesCS6A02G012200.1, TraesCS6B02G018600.1, TraesCS7A02G562200.1.cds1, TraesCS7B02G500500.1.cds1, TraesCS7D02G512300.1.cds1, TraesCS7D02G512400.1.cds1, TraesCSU02G055500.1, TraesCSU02G218400.1, TraesCSU02G221200.1
Poaceae Zoysia japonica 4 nbis-gene-27273, nbis-gene-41884, nbis-gene-49136 ...
nbis-gene-54856
Poaceae Zoysia macrostachya 3 Zma_g18560, Zma_g19347, Zma_g8005
Posidoniaceae Posidonia oceanica 1 gene.Posoc02g32710
Tamaricaceae Tamarix chinensis 1 TC12G1151
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.