Basic Information
Locus ID:
gene.Posoc02g32390
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
TIR1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 453216624 | 453220997 | + | gene.Posoc02g32390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 65,908.68 Da | 44.94 | 97.03 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 83 | 129 | 6.9E-21 | IPR041101 |
| Pfam | PF18511 | F-box | 25 | 64 | 4.3E-13 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 87 | 551 | 5.76E-33 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 62 | 1.1E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 63 | 595 | 5.6E-169 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 146 | 171 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 448 | 471 | 64.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 121 | 145 | 160.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 388 | 412 | 5.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 521 | 21.0 | IPR006553 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PHC9 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_23G00160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology