Basic Information
Locus ID:
gene.Posoc02g30250
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
endonuclease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 431857164 | 431858516 | - | gene.Posoc02g30250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 49,402.46 Da | 31.02 | 95.47 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 179 | 228 | 3.8E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 249 | 297 | 7.7E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 5 | 32 | 0.0049 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 320 | 347 | 2.6E-9 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 69 | 101 | 7.1E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 356 | 403 | 1.1E-16 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 109 | 157 | 7.2E-13 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1 | 89 | 1.3E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 90 | 195 | 3.1E-28 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 301 | 441 | 8.0E-37 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 196 | 300 | 1.1E-24 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 147 | 181 | 0.0019 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 359 | 393 | 2.0E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 41 | 74 | 1.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 112 | 145 | 2.7E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 322 | 357 | 1.2E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 287 | 320 | 1.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 5 | 32 | 1.9E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 182 | 215 | 3.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 77 | 111 | 3.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 395 | 428 | 6.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 252 | 285 | 1.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 220 | 251 | 8.8E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 39 | 73 | 10.226951 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | 11.553267 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 215 | 249 | 9.788499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 145 | 179 | 9.678885 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 250 | 284 | 11.619036 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 320 | 354 | 10.796938 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 3 | 37 | 8.758137 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | 13.230347 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 74 | 109 | 9.854266 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 180 | 214 | 9.733692 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 110 | 144 | 11.125777 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 285 | 319 | 9.54735 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11460.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_029123326.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC105055542 [Elaeis guineensis] | 0 |
| Q9CAY1 | Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H52 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8N4IB06 | LOW QUALITY PROTEIN: uncharacterized protein LOC105055542 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105055542 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology