Basic Information
Locus ID:
gene.Posoc02g29860
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 428788109 | 428788876 | - | gene.Posoc02g29860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 13,635.81 Da | 39.78 | 87.79 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 23 | 118 | 2.9E-25 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 22 | 119 | 3.4E-27 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 5 | 121 | 8.3E-45 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 23 | 118 | 1.2E-32 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 20 | 119 | 3.7E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 21 | 34 | 1.6E-9 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 57 | 72 | 1.6E-9 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 79 | 93 | 1.6E-9 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 19 | 119 | 16.519815 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_042504186.1 | 40S ribosomal protein S20-2 [Macadamia integrifolia] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8AEZ9 | 40S ribosomal protein S20-2 OS=Nelumbo nucifera OX=4432 GN=LOC104602247 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology