Basic Information
Locus ID:
gene.Posoc02g29820
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 428418070 | 428419095 | + | gene.Posoc02g29820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 35,883.71 Da | 65.27 | 80.03 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 144 | 187 | 6.29917E-20 | - |
| Pfam | PF13639 | Ring finger domain | 144 | 187 | 1.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 193 | 8.95E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 194 | 3.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 145 | 186 | 2.9E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 141 | 195 | 0.004 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 187 | 13.049892 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 341 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034675063.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Vitis riparia] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N5P4F9 | RING-type E3 ubiquitin transferase OS=Salix brachista OX=2182728 GN=DKX38_001067 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology