Basic Information
Locus ID:
gene.Posoc02g27900
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 406501604 | 406502395 | + | gene.Posoc02g27900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 28,137.54 Da | 49.62 | 77.07 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 95 | 138 | 1.93198E-18 | - |
| Pfam | PF13639 | Ring finger domain | 95 | 138 | 8.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 145 | 1.37E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 145 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 137 | 1.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 138 | 12.445019 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 196 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_008777854.3 | RING-H2 finger protein ATL3-like [Phoenix dactylifera] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BIP9 | RING-H2 finger protein ATL3-like OS=Phoenix dactylifera OX=42345 GN=LOC103697716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology