Basic Information
Locus ID:
gene.Posoc02g27420
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 400408871 | 400413558 | + | gene.Posoc02g27420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 46,345.39 Da | 52.36 | 69.32 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 8.398E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 263 | 337 | 9.82072E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 1.21386E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 3.4E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 1.2E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 330 | 3.6E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 256 | 342 | 1.63E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 136 | 236 | 2.15E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 42 | 135 | 1.75E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 140 | 1.9E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 341 | 1.7E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 221 | 2.9E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 1.1E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 333 | 1.1E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 264 | 333 | 22.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 6.3E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 143 | 216 | 0.0019 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.203922 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.148237 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 337 | 15.971415 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 259 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_038990278.1 | oligouridylate-binding protein 1-like [Phoenix dactylifera] | 0 |
| Q9LJH8 | Oligouridylate-binding protein 1C OS=Arabidopsis thaliana OX=3702 GN=UBP1C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9B216 | oligouridylate-binding protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103698716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology