Basic Information
Locus ID:
gene.Posoc02g25940
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 386573542 | 386579990 | + | gene.Posoc02g25940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 37,527.15 Da | 44.50 | 77.87 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 66 | 124 | 1.3E-5 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 59 | 151 | 8.42E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 57 | 133 | 6.8E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 64 | 133 | 1.5E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 63 | 137 | 11.076515 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 347 | - | - |
| Coils | Coil | Coil | 279 | 299 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_010271222.1 | PREDICTED: binding partner of ACD11 1-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XX86 | Protein vip1 OS=Anthurium amnicola OX=1678845 GN=vip1_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology