Basic Information
Locus ID:
gene.Posoc02g25590
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 381968149 | 381968874 | - | gene.Posoc02g25590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 26,717.59 Da | 91.87 | 69.54 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 52 | 96 | 3.66096E-24 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 53 | 99 | 1.4E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 101 | 3.31E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 128 | 1.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 54 | 94 | 1.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 95 | 13.846554 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 69 | 78 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 206 | - | - |
| Coils | Coil | Coil | 166 | 186 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002957324.1 | hypothetical protein VOLCADRAFT_34979, partial [Volvox carteri f. nagariensis] | 0 |
| Q6PC78 | E3 ubiquitin-protein ligase RNF185 OS=Danio rerio OX=7955 GN=rnf185 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YQG2 | RING-type E3 ubiquitin transferase (Fragment) OS=Anthurium amnicola OX=1678845 GN=RMA3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology