Basic Information
Locus ID:
gene.Posoc02g22330
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 340129079 | 340129528 | - | gene.Posoc02g22330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 16,480.99 Da | 57.45 | 99.46 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 86 | 129 | 7.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 135 | 2.5E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 54 | 135 | 9.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 87 | 128 | 1.3E-5 | IPR001841 |
| SMART | SM00744 | ringv_2 | 86 | 129 | 2.3E-4 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 129 | 13.005633 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_008803170.2 | probable E3 ubiquitin-protein ligase XERICO [Phoenix dactylifera] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1ZLL8 | RING-H2 zinc finger protein RHA1a OS=Anthurium amnicola OX=1678845 GN=RHA1A_9 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology