Basic Information
Locus ID:
gene.Posoc02g20870
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 326477389 | 326477898 | - | gene.Posoc02g20870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.43 | 18,518.26 Da | 30.97 | 81.01 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 98 | 160 | 3.38075E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 23 | 84 | 5.0E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 96 | 159 | 4.2E-16 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 15 | 160 | 4.91E-44 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 90 | 166 | 2.4E-24 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 9 | 89 | 4.1E-22 | - |
| SMART | SM00054 | efh_1 | 98 | 126 | 1.7E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 134 | 162 | 3.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 59 | 87 | 0.0021 | IPR002048 |
| SMART | SM00054 | efh_1 | 23 | 51 | 1.0E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 19 | 54 | 14.513405 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 94 | 129 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 130 | 165 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 55 | 90 | 11.249643 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 32 | 44 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 68 | 80 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 143 | 155 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 107 | 119 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_010933432.1 | probable calcium-binding protein CML18 [Elaeis guineensis] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RW87 | probable calcium-binding protein CML18 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105053828 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology