Basic Information
Locus ID:
gene.Posoc02g18990
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 304411684 | 304422480 | + | gene.Posoc02g18990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 135,918.86 Da | 34.58 | 91.11 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 1.00849E-71 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 44 | 79 | 3.4E-5 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 829 | 1210 | 6.3E-145 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 3.7E-7 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 341 | 768 | 2.7E-126 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 6.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 2.3E-5 | IPR001680 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 237 | 547 | 4.18E-15 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 2.08E-71 | IPR036322 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 8.6E-60 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 2.2E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 9.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 4.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 1.0E-9 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1206 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 172 | 15.220417 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.706503 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 276 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 12.947979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 13.482671 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.446495 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 1.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 219 | 233 | 1.8E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_010919611.1 | coatomer subunit alpha-1 [Elaeis guineensis] | 0 |
| Q0J3D9 | Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0127800 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0IF46 | Coatomer subunit alpha OS=Cocos nucifera OX=13894 GN=COCNU_07G005410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology