Basic Information
Locus ID:
gene.Posoc02g18880
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
DNA-directed 5'-3' RNA polymerase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 303017963 | 303020647 | + | gene.Posoc02g18880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 22,198.29 Da | 36.05 | 69.29 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 31 | 197 | 3.4E-66 | IPR033389 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 38 | 51 | 0.15 | IPR000048 |
| Pfam | PF00612 | IQ calmodulin-binding motif | 14 | 30 | 0.26 | IPR000048 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 104 | 197 | 1.08E-15 | - |
| Gene3D | G3DSA:1.20.5.190 | - | 1 | 40 | 2.6E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 103 | 197 | 2.4E-33 | - |
| ProSiteProfiles | PS50096 | IQ motif profile. | 11 | 40 | 8.4619 | IPR000048 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 109 | 197 | 21.626566 | IPR000270 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_039124818.1 | auxin-responsive protein IAA21-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A804I3Q8 | Auxin-responsive protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_71960.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology