Basic Information
Locus ID:
gene.Posoc02g17680
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
SH3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 286819386 | 286828931 | - | gene.Posoc02g17680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 60,027.60 Da | 47.86 | 83.41 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00176 | SNF2 family N-terminal domain | 94 | 204 | 1.6E-13 | IPR000330 |
| Pfam | PF01632 | Ribosomal protein L35 | 48 | 96 | 1.4E-14 | IPR021137 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 241 | 326 | 7.32E-8 | IPR027267 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 95 | 191 | 8.35E-17 | IPR027417 |
| SUPERFAMILY | SSF143034 | L35p-like | 48 | 97 | 2.88E-13 | IPR037229 |
| Gene3D | G3DSA:1.25.40.470 | - | 409 | 477 | 3.9E-14 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 93 | 216 | 3.5E-25 | IPR038718 |
| TIGRFAM | TIGR00001 | rpmI_bact: ribosomal protein bL35 | 48 | 103 | 4.4E-16 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 67 | 81 | 9.3E-15 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 82 | 100 | 9.3E-15 | IPR001706 |
| PRINTS | PR00064 | Ribosomal protein L35 signature | 49 | 66 | 9.3E-15 | IPR001706 |
| Hamap | MF_00514 | 50S ribosomal protein L35 [rpmI]. | 47 | 111 | 14.232674 | IPR001706 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 347 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18060.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_018856688.1 | protein CHROMATIN REMODELING 24 isoform X2 [Juglans regia] | 0 |
| A0A0P0WGX7 | SNF2 domain-containing protein ENL1 OS=Oryza sativa subsp. japonica OX=39947 GN=ENL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q3C1 | Intersectin 1 (SH3 domain protein) OS=Zostera marina OX=29655 GN=ZOSMA_10G00460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22213 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_516 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah016678, Ah038605 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40531, Sbi_jg50567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018066 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl45154, Sgl45157, Sgl45271, Sgl49942, Sgl50053 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010040, gene:ENSEOMG00000032542 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0008400, CQ.Regalona.r1.8BG0009500 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30070700, pistato.v30243060 |
| Apiaceae | Apium graveolens | 1 | Ag8G00825 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G012240 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1154.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G02755 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G18060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025600m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16070.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g072240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0424 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0521 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g05210 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g22670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12092 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.714 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038412 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14544 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.3111, AH07.114, BH03.3295, CH03.3480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0568640, gene-QOZ80_7BG0599950 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0142500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_041124 |
| Poaceae | Oryza coarctata | 2 | Oco13G008250, Oco14G008720 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g32460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G288700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304161, Pt_Chr0405483 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr19G005870, Chr24G008230, Chr27G011430, Chr28G007550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G419800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG030240, gene_TRIDC2BG033910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G226200.1, TraesCS2B02G249500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb105750_P001, Zm00001eb331320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-929 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6494 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.139, evm.TU.LG26.910 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g17680, gene.Posoc04g21580, gene.Posoc10g03620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.851 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-31722 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5491 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17176 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.64 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15910 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11079 |
| Salicaceae | Populus euphratica | 2 | populus_peu00964, populus_peu17951 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622159 |
| Solanaceae | Solanum chilense | 1 | SOLCI004243600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008662 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5809 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2834 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23010.v3.1 |