Basic Information
Locus ID:
gene.Posoc02g16660
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 277231269 | 277234342 | - | gene.Posoc02g16660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 29,776.17 Da | 42.90 | 91.18 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 2 | 70 | 1.87793E-11 | IPR013763 |
| CDD | cd00043 | CYCLIN | 57 | 111 | 9.11078E-13 | IPR013763 |
| Pfam | PF02984 | Cyclin, C-terminal domain | 59 | 115 | 2.6E-16 | IPR004367 |
| Pfam | PF00134 | Cyclin, N-terminal domain | 3 | 46 | 1.0E-13 | IPR006671 |
| Pfam | PF02309 | AUX/IAA family | 138 | 263 | 1.1E-60 | IPR033389 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 2 | 56 | 2.34E-16 | IPR036915 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 170 | 263 | 3.29E-16 | - |
| SUPERFAMILY | SSF47954 | Cyclin-like | 58 | 116 | 2.6E-18 | IPR036915 |
| Gene3D | G3DSA:1.10.472.10 | - | 2 | 44 | 1.6E-15 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 47 | 145 | 1.2E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 169 | 263 | 1.3E-32 | - |
| SMART | SM00385 | cyclin_7 | 1 | 58 | 4.8 | IPR013763 |
| SMART | SM00385 | cyclin_7 | 63 | 211 | 3.4E-7 | IPR013763 |
| SMART | SM01332 | Cyclin_C_2 | 59 | 186 | 3.2E-13 | IPR004367 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 175 | 263 | 23.218262 | IPR000270 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.2 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_039124818.1 | auxin-responsive protein IAA21-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YVV6 | Auxin-responsive protein OS=Anthurium amnicola OX=1678845 GN=IAA27_2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology