Basic Information
Locus ID:
gene.Posoc02g15890
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 269505323 | 269532319 | - | gene.Posoc02g15890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 175,819.20 Da | 38.55 | 106.72 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 944 | 1238 | 3.97512E-96 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 625 | 825 | 7.60408E-105 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 312 | 599 | 2.29581E-105 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1261 | 1481 | 1.6532E-115 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1187 | 8.0E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1280 | 1428 | 6.6E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 313 | 579 | 2.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 644 | 777 | 9.0E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 944 | 1243 | 1.7E-50 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 302 | 609 | 5.1E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 847 | 8.56E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1493 | 4.64E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1246 | 1498 | 3.9E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 604 | 860 | 4.6E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 905 | 1244 | 6.6E-61 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 282 | 603 | 3.9E-53 | IPR036640 |
| SMART | SM00382 | AAA_5 | 652 | 825 | 3.7E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1289 | 1481 | 2.0E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1263 | 1497 | 16.846876 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 625 | 848 | 22.782553 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 315 | 591 | 37.290257 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 946 | 1216 | 33.768864 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 750 | 764 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 904 | - | - |
| Coils | Coil | Coil | 472 | 492 | - | - |
| Coils | Coil | Coil | 902 | 922 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_008778002.1 | ABC transporter C family member 5-like isoform X1 [Phoenix dactylifera] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PDT4 | Multidrug resistance protein ABC transporter family OS=Zostera marina OX=29655 GN=ZOSMA_279G00070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology