halophFGD

Basic Information

Locus ID: gene.Posoc02g13790

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	237407855	237408208	-	gene.Posoc02g13790

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.26	12,947.56 Da	62.80	80.77	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G01680.1	plant U-box 54.
RefSeq	XP_042446154.1	U-box domain-containing protein 33-like [Zingiber officinale]
TrEMBL	A0A843UTR0	RING-type E3 ubiquitin transferase (Fragment) OS=Colocasia esculenta OX=4460 GN=Taro_016695 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg4509
Casuarinaceae	Casuarina equisetifolia	6	Ceq01G0563, Ceq05G0394, Ceq05G0397, Ceq05G0400, Ceq05G1210 ... Ceq05G1212
Casuarinaceae	Casuarina glauca	1	Cgl05G1223
Poaceae	Zoysia japonica	1	nbis-gene-37323
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g13790