Basic Information
Locus ID:
gene.Posoc02g13280
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 226603608 | 226613415 | + | gene.Posoc02g13280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 68,001.14 Da | 33.29 | 98.38 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 250 | 292 | 2.59179E-26 | - |
| Pfam | PF04564 | U-box domain | 246 | 316 | 7.2E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 373 | 412 | 8.9E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 496 | 535 | 2.5E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 457 | 494 | 2.1E-6 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 339 | 617 | 1.12E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 320 | 6.36E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 456 | 621 | 2.0E-28 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 16 | 125 | 5.1E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 317 | 455 | 7.6E-25 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 246 | 316 | 1.7E-29 | IPR013083 |
| SMART | SM00185 | arm_5 | 455 | 495 | 0.036 | IPR000225 |
| SMART | SM00185 | arm_5 | 332 | 371 | 310.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 537 | 577 | 45.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 414 | 454 | 0.034 | IPR000225 |
| SMART | SM00185 | arm_5 | 496 | 536 | 0.27 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 249 | 312 | 6.3E-33 | IPR003613 |
| SMART | SM00185 | arm_5 | 373 | 413 | 0.046 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 466 | 508 | 9.0474 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 384 | 426 | 11.6024 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 245 | 319 | 42.089607 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_038970861.1 | U-box domain-containing protein 12-like [Phoenix dactylifera] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8Z9X0 | RING-type E3 ubiquitin transferase OS=Phoenix dactylifera OX=42345 GN=LOC103714880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology