Basic Information
Locus ID:
gene.Posoc02g04180
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Ras family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 19959750 | 19961174 | - | gene.Posoc02g04180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 34,221.08 Da | 39.24 | 89.40 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00071 | Ras family | 67 | 168 | 3.0E-28 | IPR001806 |
| Pfam | PF08392 | FAE1/Type III polyketide synthase-like protein | 1 | 47 | 2.3E-10 | IPR013601 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 171 | 1.53E-26 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 210 | 284 | 7.76E-12 | IPR011009 |
| Gene3D | G3DSA:3.40.50.300 | - | 45 | 186 | 6.5E-32 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 209 | 296 | 1.6E-18 | - |
| SMART | SM00175 | rab_sub_5 | 45 | 172 | 2.2E-39 | - |
| SMART | SM00174 | rho_sub_3 | 45 | 168 | 2.0E-6 | IPR001806 |
| SMART | SM00173 | ras_sub_4 | 45 | 172 | 2.5E-7 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 199 | 300 | 9.488874 | IPR000719 |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 1 | 279 | 11.382101 | IPR001806 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 1 | 216 | 18.427258 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05810.1 | RAB GTPase homolog A5E. | 0 |
| RefSeq | XP_010241769.1 | PREDICTED: ras-related protein RABA5c [Nelumbo nucifera] | 0 |
| P19892 | Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7YV80 | ras-related protein RABA5c OS=Nelumbo nucifera OX=4432 GN=LOC104586291 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g21540, gene.Posoc02g04180, gene.Posoc04g19840 ... |