Basic Information
Locus ID:
gene.Posoc02g00530
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2478380 | 2481994 | - | gene.Posoc02g00530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 54,196.29 Da | 55.62 | 64.67 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 114 | 166 | 2.3373E-27 | - |
| Pfam | PF00412 | LIM domain | 114 | 168 | 9.1E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 263 | 471 | 1.0E-100 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 140 | 194 | 5.02E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 107 | 139 | 8.93E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 110 | 173 | 9.1E-14 | - |
| SMART | SM00132 | lim_4 | 113 | 165 | 1.5E-10 | IPR001781 |
| SMART | SM00726 | uim | 80 | 99 | 0.3 | IPR003903 |
| SMART | SM00726 | uim | 52 | 71 | 7.9 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 112 | 172 | 11.880099 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 114 | 148 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 422 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_009399857.1 | PREDICTED: protein DA1-related 2-like [Musa acuminata subsp. malaccensis] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5ETV8 | protein DA1-related 2 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109709251 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology