Basic Information
Locus ID:
gene.Posoc02g00380
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 1896874 | 1899389 | + | gene.Posoc02g00380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 23,805.32 Da | 49.14 | 73.52 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 102 | 152 | 1.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 99 | 155 | 3.53E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 87 | 164 | 4.6E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 101 | 153 | 9.5E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 94 | 159 | 18.180891 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_010905985.1 | uncharacterized protein LOC105033039 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QBB8 | uncharacterized protein LOC105033039 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology