Basic Information
Locus ID:
gene.Posoc01g40440
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 528433739 | 528438684 | - | gene.Posoc01g40440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 165,041.97 Da | 64.47 | 50.45 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 64 | 5.05E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 118 | 1.4E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 59 | 0.0026 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 59 | 9.863244 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 37 | 46 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1468 | 1500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1166 | 1185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1134 | 1149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 683 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 849 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 826 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1468 | 1492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1130 | 1158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 407 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_043699216.1 | trithorax group protein osa-like isoform X4 [Telopea speciosissima] | 0 |
| TrEMBL | A0A0K9NPS2 | RING-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_7G01080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16585 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6935 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027925 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1653, Sbi_jg34898 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3095 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003279 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72842, Sgl76371 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004676, gene:ENSEOMG00000036551 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0003620, CQ.Regalona.r1.9BG0001980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30062050 |
| Apiaceae | Apium graveolens | 2 | Ag8G00603, AgUnG00282 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704084 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_02.52.V1.1, AsparagusV1_02.53.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G27770 |
| Brassicaceae | Brassica nigra | 7 | BniB02g038520.2N, BniB02g038540.2N, BniB02g038560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1962 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G2039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18390 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016268 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb6G31551, Lb6G31552, Lb6G31553 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3960, CH06.2312 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040040, gene-QOZ80_1BG0090080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0460350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002861, gene-QYE76_014953 |
| Poaceae | Oryza coarctata | 2 | Oco23G002040, Oco24G001610 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g05920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G338100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703237 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G004560, Chr05G028790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G231600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG021640, gene_TRIDC5BG022210 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G127600.1, TraesCS5B02G126600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb159160_P001, Zm00001eb358910_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11391 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9006 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3227, evm.TU.LG16.374, evm.TU.LG19.922 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40440 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.174 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24626 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15440 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19476 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.457 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018106 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5531 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11699 |
| Salicaceae | Populus euphratica | 3 | populus_peu02062, populus_peu02063, populus_peu35747 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631019 |
| Solanaceae | Solanum chilense | 1 | SOLCI004500200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030925 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2974 |
| Tamaricaceae | Tamarix chinensis | 2 | TC11G0154, TC11G1130 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40990.v3.1 |