Basic Information
Locus ID:
gene.Posoc01g40190
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
BRH1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 526780272 | 526781450 | - | gene.Posoc01g40190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 25,326.30 Da | 64.30 | 63.98 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 116 | 157 | 7.2E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 163 | 5.44E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 164 | 1.3E-15 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_024994144.1 | E3 ubiquitin-protein ligase RHA1B-like [Cynara cardunculus var. scolymus] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P4M1 | RING-type domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_38G00630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 6 | gene.Posoc01g00810, gene.Posoc01g40190, gene.Posoc02g14590 ... |