Basic Information
Locus ID:
gene.Posoc01g39800
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
TRIP-1
Description:
component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 521627464 | 521629415 | + | gene.Posoc01g39800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 13,976.71 Da | 30.48 | 71.86 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 40 | 72 | 2.9E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 105 | 7.02E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 31 | 129 | 7.9E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 72 | 1.4E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 40 | 81 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 40 | 76 | 9.836508 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 59 | 73 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46290.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010275012.1 | PREDICTED: eukaryotic translation initiation factor 3 subunit I-like isoform X2 [Nelumbo nucifera] | 0 |
| Q38884 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U8B6A2 | eukaryotic translation initiation factor 3 subunit I-like isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104610193 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene.Posoc01g39800.