Basic Information
Locus ID:
gene.Posoc01g38770
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 509180657 | 509181895 | + | gene.Posoc01g38770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 44,651.83 Da | 88.06 | 51.16 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 196 | 237 | 3.68134E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 273 | 389 | 1.6E-41 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 195 | 237 | 1.4E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 6 | 36 | 4.5E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 190 | 242 | 1.79E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 243 | 4.8E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 236 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 237 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 267 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_009387750.1 | PREDICTED: E3 ubiquitin-protein ligase RDUF1-like [Musa acuminata subsp. malaccensis] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A843VY49 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_030522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology