Basic Information
Locus ID:
gene.Posoc01g38200
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 503842881 | 503847045 | - | gene.Posoc01g38200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 77,800.80 Da | 41.42 | 91.84 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 293 | 335 | 5.9253E-27 | - |
| Pfam | PF04564 | U-box domain | 289 | 359 | 2.0E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 499 | 537 | 2.7E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 416 | 455 | 1.8E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 387 | 662 | 2.57E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 364 | 9.27E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 374 | 479 | 1.8E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 480 | 678 | 3.7E-29 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 42 | 156 | 5.4E-9 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 287 | 362 | 9.3E-29 | IPR013083 |
| SMART | SM00185 | arm_5 | 498 | 538 | 0.18 | IPR000225 |
| SMART | SM00185 | arm_5 | 580 | 620 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 416 | 456 | 1.5E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 457 | 497 | 0.36 | IPR000225 |
| SMART | SM00185 | arm_5 | 539 | 579 | 140.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 292 | 355 | 1.3E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 375 | 414 | 230.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 288 | 362 | 42.753033 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 468 | 510 | 8.6974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 509 | 551 | 9.0124 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 427 | 469 | 11.6724 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| Coils | Coil | Coil | 659 | 693 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_010920613.1 | protein spotted leaf 11 [Elaeis guineensis] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PZF9 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_128G00190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology