Basic Information
Locus ID:
gene.Posoc01g37240
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 491737212 | 491737832 | + | gene.Posoc01g37240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 22,328.67 Da | 59.47 | 97.91 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 96 | 149 | 1.1E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 155 | 9.72E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 57 | 155 | 7.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 98 | 148 | 1.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 98 | 149 | 11.604098 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020571618.1 | RING-H2 finger protein ATL10-like [Phalaenopsis equestris] | 0 |
| TrEMBL | A0A0K9P8B6 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_36G00230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 5 | Ah024091, Ah024096, Ah024100, Ah024103, Ah028031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106860 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51260, Sgl56564 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000034526, gene:ENSEOMG00000035380 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0013220 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30983 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.1865 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37240 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36610.v3.1 |