Basic Information
Locus ID:
gene.Posoc01g37220
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
PDC1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 491720508 | 491722663 | - | gene.Posoc01g37220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 64,808.33 Da | 30.39 | 90.23 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 403 | 585 | 4.70793E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 44 | 203 | 4.9256E-91 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 448 | 573 | 2.2E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 41 | 207 | 3.5E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 238 | 350 | 6.0E-19 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 403 | 597 | 2.5E-42 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 233 | 380 | 6.33E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 41 | 217 | 6.84E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 37 | 214 | 1.8E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 394 | 587 | 3.1E-56 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 228 | 390 | 1.8E-40 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 36 | 597 | 6.5E-211 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01320.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_010922580.1 | pyruvate decarboxylase 2 [Elaeis guineensis] | 0 |
| Q9M040 | Pyruvate decarboxylase 4 OS=Arabidopsis thaliana OX=3702 GN=PDC4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0I5I6 | pyruvate decarboxylase OS=Cocos nucifera OX=13894 GN=COCNU_04G003400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology