Basic Information
Locus ID:
gene.Posoc01g36390
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Clathrin assembly protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 474247341 | 474254383 | - | gene.Posoc01g36390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 31,627.81 Da | 50.35 | 80.70 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 100 | 9.6E-7 | IPR001680 |
| Pfam | PF07651 | ANTH domain | 1 | 61 | 8.3E-14 | IPR011417 |
| SUPERFAMILY | SSF89009 | GAT-like domain | 1 | 61 | 2.83E-14 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 75 | 105 | 8.24E-7 | IPR036322 |
| Gene3D | G3DSA:1.20.58.150 | ANTH domain | 1 | 62 | 3.0E-11 | IPR014712 |
| Gene3D | G3DSA:2.130.10.10 | - | 63 | 125 | 1.6E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 61 | 100 | 1.7E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 68 | 100 | 9.151057 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 100 | 11.143396 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14910.2 | - | 0 |
| RefSeq | XP_020105861.1 | putative clathrin assembly protein At2g01600 isoform X2 [Ananas comosus] | 0 |
| P94017 | Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana OX=3702 GN=At1g14910 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6P5GB55 | putative clathrin assembly protein At2g01600 isoform X2 OS=Ananas comosus OX=4615 GN=LOC109722285 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g105470 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG21.853, evm.TU.LG26.828 |
| Posidoniaceae | Posidonia oceanica | 12 | gene.Posoc01g21050, gene.Posoc01g36390, gene.Posoc04g12350 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000459 |