Basic Information
Locus ID:
gene.Posoc01g36140
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 471011535 | 471020297 | + | gene.Posoc01g36140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 49,862.95 Da | 45.48 | 81.55 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 202 | 309 | 4.4E-12 | IPR020683 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 3 | 52 | 3.6E-14 | IPR025312 |
| Pfam | PF04762 | IKI3 family | 326 | 407 | 6.5E-15 | IPR006849 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 202 | 316 | 8.8E-16 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 199 | 339 | 3.4E-17 | IPR036770 |
| SMART | SM00248 | ANK_2a | 231 | 263 | 290.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 189 | 226 | 700.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 285 | 314 | 0.022 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 285 | 317 | 11.24708 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 285 | 309 | 10.68342 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_021275779.1 | E3 ubiquitin-protein ligase XBAT32 isoform X4 [Herrania umbratica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A200QZ73 | Ankyrin repeat OS=Macleaya cordata OX=56857 GN=BVC80_1829g21 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology