Basic Information
Locus ID:
gene.Posoc01g36070
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 470903226 | 470908728 | + | gene.Posoc01g36070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 192,138.38 Da | 44.41 | 74.72 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 339 | 425 | 9.36488E-28 | - |
| CDD | cd00590 | RRM_SF | 953 | 1013 | 3.08614E-5 | - |
| Pfam | PF00855 | PWWP domain | 339 | 424 | 1.4E-18 | IPR000313 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 957 | 1005 | 1.9E-4 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 950 | 1013 | 9.09E-8 | IPR035979 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 337 | 442 | 1.75E-25 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 330 | 434 | 2.0E-25 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 958 | 1016 | 5.7E-6 | IPR012677 |
| SMART | SM00384 | AT_hook_2 | 787 | 799 | 31.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 762 | 774 | 1.3 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 874 | 886 | 180.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 566 | 578 | 340.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 811 | 823 | 0.98 | IPR017956 |
| SMART | SM00293 | PWWP_4 | 339 | 400 | 4.4E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 341 | 402 | 15.700391 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1776 | 1798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1783 | 1798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1027 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 593 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_008805031.1 | uncharacterized protein LOC103718133 isoform X5 [Phoenix dactylifera] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P3U9 | PWWP domain-containing protein OS=Zostera marina OX=29655 GN=ZOSMA_3G01350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology