Basic Information
Locus ID:
gene.Posoc01g36030
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 470794517 | 470812058 | + | gene.Posoc01g36030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.82 | 180,021.94 Da | 45.02 | 93.38 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1225 | 1607 | 1.02181E-101 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1269 | 1609 | 6.1E-75 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 122 | 595 | 2.2E-32 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1217 | 1602 | 1.16E-89 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1164 | 1386 | 1.2E-35 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 161 | 597 | 6.1E-40 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1492 | 1607 | 3.1E-32 | - |
| SMART | SM00185 | arm_5 | 483 | 524 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 714 | 762 | 48.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 190 | 231 | 29.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 320 | 358 | 65.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 233 | 274 | 21.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1234 | 1609 | 7.3E-82 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1248 | 1609 | 58.815464 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 153 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010922508.1 | E3 ubiquitin-protein ligase UPL4 [Elaeis guineensis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8K0N0B2 | HECT-type E3 ubiquitin transferase OS=Cocos nucifera OX=13894 GN=COCNU_04G002900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology