Basic Information
Locus ID:
gene.Posoc01g35790
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 469325530 | 469327370 | - | gene.Posoc01g35790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 19,257.76 Da | 46.08 | 90.76 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 156 | 4.37E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 169 | 7.8E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 1.6E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 62 | 93 | 9.388329 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 93 | 11.210233 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_020227012.1 | topless-related protein 1 isoform X2 [Cajanus cajan] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B7APG5 | Putative topless-related protein 4-like isoform X4 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026414 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g35790 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-17224, nbisL1-mrna-23951, nbisL1-mrna-24023 ... |