Basic Information
Locus ID:
gene.Posoc01g34490
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 456771784 | 456783166 | + | gene.Posoc01g34490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 90,378.85 Da | 50.48 | 81.41 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 132 | 187 | 1.5E-9 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 402 | 451 | 1.4E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 541 | 603 | 3.77E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 464 | 511 | 9.97E-14 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 700 | 786 | 1.89E-5 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 459 | 533 | 2.7E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 541 | 602 | 8.9E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 468 | 509 | 9.8E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 543 | 599 | 7.3E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 466 | 511 | 10.0418 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 469 | 508 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 33 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010260093.1 | PREDICTED: uncharacterized protein LOC104599305 [Nelumbo nucifera] | 0 |
| Q14839 | Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens OX=9606 GN=CHD4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3S3MLW6 | Zinc finger protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01492100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology