Basic Information
Locus ID:
gene.Posoc01g30810
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
ATP-dependent DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 410466710 | 410479793 | + | gene.Posoc01g30810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 67,164.46 Da | 50.69 | 82.69 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 379 | 512 | 1.23901E-61 | - |
| CDD | cd17920 | DEXHc_RecQ | 181 | 378 | 2.18649E-94 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 394 | 502 | 6.5E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 189 | 359 | 2.4E-16 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 515 | 584 | 8.7E-13 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 524 | 1.78E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 379 | 586 | 6.2E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 378 | 2.6E-84 | IPR027417 |
| SMART | SM00487 | ultradead3 | 183 | 387 | 3.4E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 421 | 503 | 4.9E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 181 | 587 | 1.6E-154 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 546 | 19.003784 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 195 | 371 | 20.524912 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_039127695.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 1 [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8A3K1 | ATP-dependent DNA helicase OS=Nelumbo nucifera OX=4432 GN=LOC104598839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology