Basic Information
Locus ID:
gene.Posoc01g28100
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 379358741 | 379441261 | + | gene.Posoc01g28100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 99,225.63 Da | 40.18 | 86.62 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 1.4276E-94 | - |
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 5.40972E-56 | - |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 2.6E-11 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 548 | 612 | 5.2E-13 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 221 | 322 | 4.8E-21 | IPR001650 |
| Pfam | PF14493 | Helix-turn-helix domain | 654 | 749 | 6.2E-16 | IPR029491 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 176 | 5.9E-21 | IPR011545 |
| Pfam | PF09382 | RQC domain | 402 | 496 | 1.5E-21 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 2.85E-57 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 496 | 9.93E-23 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 543 | 624 | 4.36E-16 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 7.4E-75 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 543 | 623 | 9.2E-16 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 523 | 2.7E-32 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 3.5E-56 | IPR027417 |
| SMART | SM00487 | ultradead3 | 10 | 201 | 3.7E-33 | IPR014001 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 1.1E-23 | IPR018982 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 9.1E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 3 | 456 | 6.4E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 376 | 19.083458 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 544 | 624 | 17.438961 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 25.535969 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_019706458.1 | uncharacterized protein LOC105045099 [Elaeis guineensis] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A1D1YAD1 | ATP-dependent DNA helicase OS=Anthurium amnicola OX=1678845 GN=recQ_11 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology