Basic Information
Locus ID:
gene.Posoc01g26330
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 366189980 | 366195737 | + | gene.Posoc01g26330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 42,333.25 Da | 44.76 | 69.01 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 124 | 162 | 5.34075E-15 | - |
| CDD | cd03829 | Sina | 240 | 368 | 5.81782E-62 | - |
| Pfam | PF03145 | Seven in absentia protein family | 168 | 367 | 4.6E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 167 | 2.69E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 179 | 371 | 7.19E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 177 | 4.8E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 235 | 367 | 9.2E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 234 | 5.0E-15 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 179 | 239 | 13.596762 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 162 | 9.346889 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_010938590.1 | E3 ubiquitin-protein ligase DIS1 [Elaeis guineensis] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SFG1 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105057629 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology