Basic Information
Locus ID:
gene.Posoc01g19640
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 299054454 | 299061364 | + | gene.Posoc01g19640 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.38 | 97,781.79 Da | 50.00 | 61.62 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 523 | 559 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 381 | 412 | 5.8E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 694 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 481 | 516 | 1.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 374 | 697 | 3.82E-52 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 624 | 879 | 6.98E-5 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 461 | 728 | 1.5E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 353 | 436 | 1.3E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 605 | 652 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 520 | 559 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 694 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 479 | 517 | 2.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 600 | 3.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 526 | 560 | 10.574686 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 414 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 526 | 560 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 486 | 526 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 422 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 486 | 520 | 10.337415 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 400 | 414 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 504 | 518 | 3.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 546 | 560 | 3.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010907750.1 | WD repeat-containing protein 44 isoform X1 [Elaeis guineensis] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8L0S3 | Uncharacterized protein OS=Spirodela intermedia OX=51605 GN=SI8410_10014259 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology