Basic Information
Locus ID:
gene.Posoc01g19400
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 295867356 | 295874794 | - | gene.Posoc01g19400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 48,815.51 Da | 45.84 | 88.81 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 56 | 140 | 6.1E-14 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 180 | 250 | 9.5E-10 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 2.24E-44 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 302 | 380 | 4.29E-10 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 150 | 308 | 4.0E-23 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 387 | 1.2E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 149 | 5.4E-29 | IPR036770 |
| SMART | SM00184 | ring_2 | 321 | 369 | 8.6E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 181 | 210 | 0.0015 | IPR002110 |
| SMART | SM00248 | ANK_2a | 224 | 253 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 84 | 113 | 0.0042 | IPR002110 |
| SMART | SM00248 | ANK_2a | 51 | 80 | 2.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 118 | 150 | 290.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 84 | 115 | 9.356852 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 181 | 205 | 10.365044 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 51 | 83 | 12.39561 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 256 | 11.48747 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 224 | 256 | 10.126261 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 181 | 213 | 10.97998 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 370 | 9.966515 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 84 | 116 | 10.44578 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 51 | 82 | 11.505894 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008779779.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A804IK36 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103980290 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology