Basic Information
Locus ID:
gene.Posoc01g16690
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 266352800 | 266358055 | - | gene.Posoc01g16690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.63 | 36,787.62 Da | 43.07 | 64.09 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 69 | 154 | 2.77122E-46 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 264 | 325 | 1.91027E-13 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 72 | 154 | 1.6E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 264 | 329 | 1.7E-7 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 65 | 164 | 2.75E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 250 | 332 | 1.83E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 60 | 173 | 1.4E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 248 | 335 | 1.1E-16 | IPR036910 |
| SMART | SM00501 | bright_3 | 68 | 159 | 1.8E-28 | IPR001606 |
| SMART | SM01014 | ARID_2 | 64 | 154 | 4.6E-25 | - |
| SMART | SM00398 | hmgende2 | 263 | 330 | 4.8E-9 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 264 | 329 | 11.432448 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 67 | 158 | 24.665058 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034679105.1 | high mobility group B protein 10 isoform X2 [Vitis riparia] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1YQJ4 | High mobility group B protein 10 (Fragment) OS=Anthurium amnicola OX=1678845 GN=HMGB10_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology