Basic Information
Locus ID:
gene.Posoc01g13160
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 124940512 | 124985853 | - | gene.Posoc01g13160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.02 | 124,634.62 Da | 71.88 | 58.37 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 730 | 859 | 1.64911E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 742 | 850 | 1.9E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 535 | 705 | 4.2E-47 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 51 | 9.07E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 583 | 867 | 8.07E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 487 | 720 | 7.0E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 721 | 892 | 3.9E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 766 | 850 | 1.9E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 530 | 733 | 3.4E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 4.5E-6 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 511 | 539 | 10.353101 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 10.561 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 542 | 716 | 30.861397 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 745 | 889 | 24.77491 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 662 | 670 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 217 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 971 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1026 | 1045 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1118 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_042990052.1 | DEAD-box ATP-dependent RNA helicase 46 [Carya illinoinensis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PRG2 | RNA helicase OS=Zostera marina OX=29655 GN=ZOSMA_193G00430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology