Basic Information
Locus ID:
gene.Posoc01g11620
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 90519306 | 90526632 | + | gene.Posoc01g11620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 44,538.40 Da | 71.29 | 59.78 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 345 | 385 | 2.40175E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 343 | 390 | 2.3E-16 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 46 | 56 | 1.23E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 345 | 391 | 7.36E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 395 | 3.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 346 | 384 | 8.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 346 | 385 | 11.412309 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016555525.1 | probable E3 ubiquitin-protein ligase LUL4 [Capsicum annuum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PPE6 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_18G00390 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology