halophFGD

Basic Information

Locus ID: gene.Posoc01g10740

Species & Taxonomic ID: Posidonia oceanica & 55489

Genome Assembly: GCA_037176725.1

Description: Transducin family protein WD-40 repeat family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	80148530	80160540	+	gene.Posoc01g10740

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.20	53,343.67 Da	43.41	71.29	-0.53

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	215	241	0.04	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	420	448	0.046	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	296	330	5.9E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	367	410	0.06	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	252	284	0.008	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	94	452	5.27E-51	IPR036322
Gene3D	G3DSA:2.130.10.10	-	348	469	1.6E-14	IPR015943
Gene3D	G3DSA:2.130.10.10	-	79	211	4.4E-6	IPR015943
Gene3D	G3DSA:2.130.10.10	-	212	347	4.8E-25	IPR015943
SMART	SM00320	WD40_4	188	241	0.37	IPR001680
SMART	SM00320	WD40_4	413	452	0.0016	IPR001680
SMART	SM00320	WD40_4	244	284	5.2E-4	IPR001680
SMART	SM00320	WD40_4	365	410	0.14	IPR001680
SMART	SM00320	WD40_4	291	330	1.3E-4	IPR001680
SMART	SM00320	WD40_4	101	138	290.0	IPR001680
PIRSF	PIRSF038135	WD_rpt_23	1	473	3.6E-197	IPR017399
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	216	250	10.007177	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	298	339	12.847725	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	420	461	9.472486	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	251	284	9.045603	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	251	284	10.775796	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	298	332	10.521959	-
PRINTS	PR00320	G protein beta WD-40 repeat signature	317	331	1.3E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	228	242	1.3E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	271	285	1.3E-5	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_039136311.1	LEC14B homolog isoform X2 [Dioscorea cayenensis subsp. rotundata]
Swiss-Prot	Q40153	LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1
TrEMBL	A0A1D1YB10	LEC14B homolog OS=Anthurium amnicola OX=1678845 GN=LE14B_7 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg27965, jg8840
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4240
Amaranthaceae	Atriplex hortensis	2	Ah020659, Ah029679
Amaranthaceae	Beta vulgaris	1	BVRB_7g165700
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829
Amaranthaceae	Salicornia europaea	2	Seu_jg13358, Seu_jg3896
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00019786
Amaranthaceae	Suaeda glauca	2	Sgl72037, Sgl75604
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... gene:ENSEOMG00000030023, gene:ENSEOMG00000034154, gene:ENSEOMG00000041088, gene:ENSEOMG00000046104
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... CQ.Regalona.r1.7AG0014900, CQ.Regalona.r1.7BG0016800
Anacardiaceae	Pistacia vera	2	pistato.v30011350, pistato.v30238220
Apiaceae	Apium graveolens	5	Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820
Arecaceae	Cocos nucifera	2	COCNU_01G002780, scaffold006566G000150
Arecaceae	Phoenix dactylifera	2	gene-LOC103721036, gene-LOC103724227
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G03224, Ftri3G19980, Ftri9G25668
Brassicaceae	Arabidopsis thaliana	1	AT4G03020.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028659m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g03060.v2.2
Brassicaceae	Brassica nigra	2	BniB08g039150.2N, BniB08g045690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1641
Casuarinaceae	Casuarina glauca	1	Cgl06G1701
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g05240
Dunaliellaceae	Dunaliella salina	1	Dusal.0973s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g22820
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6289, nbisL1-mrna-9649
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995
Plantaginaceae	Plantago ovata	1	Pov_00024805
Plumbaginaceae	Limonium bicolor	1	Lb8G36260
Poaceae	Echinochloa crus-galli	7	AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... CH05.1145, CH05.2695
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... gene-QOZ80_5AG0373540, gene-QOZ80_5AG0405310, gene-QOZ80_5BG0422710, gene-QOZ80_5BG0453440
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... HORVU.MOREX.r3.1HG0062700.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009485, gene-QYE76_013335
Poaceae	Oryza coarctata	5	Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... Oco10G009530
Poaceae	Oryza sativa	3	LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G040800, gene-BS78_09G141300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203
Poaceae	Sporobolus alterniflorus	5	Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... Chr22G008650
Poaceae	Thinopyrum elongatum	4	Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... Tel5E01G051200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... gene_TRIDC1AG038120, gene_TRIDC1BG011120, gene_TRIDC1BG015210, gene_TRIDC1BG042990
Poaceae	Triticum aestivum	9	TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... TraesCS1A02G255000.1, TraesCS1B02G083400.1, TraesCS1B02G105200.2, TraesCS1B02G263400.2, TraesCS1D02G066000.1, TraesCS1D02G088200.1, TraesCS1D02G254400.1
Poaceae	Zea mays	2	Zm00001eb349670_P002, Zm00001eb354420_P001
Poaceae	Zoysia japonica	2	nbis-gene-18207, nbis-gene-52838
Poaceae	Zoysia macrostachya	3	Zma_g26411, Zma_g26852, Zma_g27685
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... evm.TU.LG14.323
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g10740
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1442, nbisL1-mrna-21349
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19926, nbisL1-mrna-21386
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18431, nbisL1-mrna-6245
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.546, evm.TU.utg000019l.900
Rhizophoraceae	Kandelia obovata	2	Maker00009533, Maker00012425
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1530, nbisL1-mrna-6297
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2052, nbisL1-mrna-5182
Salicaceae	Populus euphratica	4	populus_peu07816, populus_peu22033, populus_peu22037 ... populus_peu27185
Solanaceae	Lycium barbarum	2	gene-LOC132605607, gene-LOC132645046
Solanaceae	Solanum chilense	2	SOLCI001973800, SOLCI002921100
Solanaceae	Solanum pennellii	2	gene-LOC107008401, gene-LOC107022037
Tamaricaceae	Reaumuria soongarica	1	gene_8484
Tamaricaceae	Tamarix chinensis	1	TC12G1524
Zosteraceae	Zostera marina	1	Zosma01g20360.v3.1