Basic Information
Locus ID:
gene.Posoc01g10390
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 76036578 | 76040139 | - | gene.Posoc01g10390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 77,330.24 Da | 42.75 | 89.44 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 186 | 232 | 7.6E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 128 | 165 | 4.1E-16 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 118 | 160 | 4.19E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 152 | 655 | 9.42E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 166 | 697 | 1.4E-169 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 126 | 165 | 5.5E-17 | - |
| SMART | SM00256 | fbox_2 | 129 | 170 | 0.0017 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 600 | 624 | 21.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 551 | 574 | 54.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 515 | 5.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 249 | 274 | 0.51 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 105 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_008804585.2 | transport inhibitor response 1-like protein Os05g0150500 [Phoenix dactylifera] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9NLC3 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_8G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology