Basic Information
Locus ID:
gene.Posoc01g10140
Species & Taxonomic ID:
Posidonia oceanica & 55489
Genome Assembly:
GCA_037176725.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 73310761 | 73313975 | - | gene.Posoc01g10140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 86,767.19 Da | 55.88 | 54.66 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 286 | 314 | 6.2E-8 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 320 | 347 | 1.0E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 279 | 315 | 5.89E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 317 | 348 | 1.4E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 278 | 316 | 2.4E-15 | - |
| SMART | SM00547 | zf_4 | 321 | 345 | 0.053 | IPR001876 |
| SMART | SM00547 | zf_4 | 288 | 312 | 3.8E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 286 | 315 | 10.0034 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 319 | 348 | 9.382329 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 323 | 342 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 290 | 309 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 376 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 705 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 751 | - | - |
| Coils | Coil | Coil | 18 | 49 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_008777783.2 | uncharacterized protein LOC103697653 [Phoenix dactylifera] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PVB6 | Zinc finger protein VAR3, chloroplastic OS=Zostera marina OX=29655 GN=ZOSMA_156G00350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology